- Masato Kogawa, Rimi Miyaoka, Franziska Hemmerling, Masahiro Ando, Kei Yura, Keigo Ide, Yohei Nishikawa, Masahito Hosokawa, Yuji Ise, Jackson K B Cahn, Kentaro Takada, Shigeki Matsunaga, Tetsushi Mori, Jörn Piel, Haruko Takeyama, “Single-cell metabolite detection and genomics reveals uncultivated talented producer”, PNAS Nexus, Volume 1, Issue1, 1-13 2022
- Amani Alma’abadi, Hayedeh Behzad, Mohammed Alarawi, David Conchouso, Yoshimoto Saito, Masahito Hosokawa, Yohei Nishikawa, Masato Kogawa, Haruko Takeyama, Katsuhiko Mineta, Takashi Gojobori, “Identification of Lipolytic Enzymes Using High-Throughput Single-cell Screening and Sorting of a Metagenomic Library”, New Biotechnology, Available online 28 May 2022.
- Jonguk Park, Koji Hosomi, Hitoshi Kawashima, Yi-An Chen, Attayeb Mohsen, Harumi Ohno, Kana Konishi, Kumpei Tanisawa, Masako Kifushi, Masato Kogawa, Haruko Takeyama, Haruka Murakami, Tetsuya Kubota, Motohiko Miyachi, Jun Kunisawa, Kenji Mizuguchi, “Dietary vitamin B1 intake influences gut microbial community and the consequent production of short-chain fatty acids”. Nutrients 2022, Volume 14, Issue10, 2078, released on 27 May 2022.
- Jun Nakayama, Hiroko Matsunaga, Koji Arikawa, Takuya Yoda, Masahito Hosokawa, Haruko Takeyama, Yusuke Yamamoto, Kentaro Semba, “Identification of two cancer stem cell-like populations in triple-negative breast cancer xenografts” Disease Models & Mechanisms 2022
- Masahito Hosokawa, Taruho Endoh, Kazuma Kamata, Koji Arikawa, Yohei Nishikawa, Masato Kogawa, Tatsuya Saeki, Takuya Yoda, Haruko Takeyama,” Strain-level profiling of viable microbial community by selective single-cell genome sequencing “. Sci. Rep., 12 (1), 1-12 2022
- Yohei Nishikawa,* Masato Kogawa,* Masahito Hosokawa,*†Katsuhiko Mineta, Kai Takahashi, Keigo Ide, Kei Yura, Hayedeh Behzad, Takashi Gojobori, Haruko Takeyama †, “Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawatem”, ISME Communications, 2, Article number: 92 (2022)
- Keigo Ide, Yoshikatsu Nakano, Yohei Nishikawa, Hiroyuki Fujimura, Michihiro Ito and Haruko Takeyama, “The Effect of Co-Culture of Two Coral Species on Their Bacterial Composition Under Captive Environments”, Marine Biotechnology, 2022, Volume 24, Issue 4
- Keigo Ide, Tatsuya Saeki, Koji Arikawa, Takuya Yoda, Taruho Endoh, Ayumi Matsuhashi, Haruko Takeyama, Masahito Hosokawa, “Exploring strain diversity of dominant human skin bacterial species using single-cell genome sequencing”, Frontiers in Microbiology, 2022, 5;13:955404
- Koji Hosomi, Mayu Saito, Jonguk Park, Haruka Murakami, Naoko Shibata, Masahiro Ando, Takahiro Nagatake, Kana Konishi, Harumi Ohno, Kumpei Tanisawa, Attayeb Mohsen, Yi-An Chen, Hitoshi Kawashima, Yayoi Natsume-Kitatani, Yoshimasa Oka, Hidenori Shimizu, Mari Furuta, Yoko Tojima, Kento Sawane, Azusa Saika, Saki Kondo, Yasunori Yonejima, Haruko Takeyama, Akira Matsutani, Kenji Mizuguchi, Motohiko Miyachi, and Jun Kunisawa “Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota”, Nature Communications 13, 4477 (2022)
- Ashok Zachariah Samuel, Kaori Sugiyama, Haruko Takeyama, “Direct intracellular detection of biomolecule specific bound-water with Raman spectroscopy”, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Volume 285, 15 January 2023, 121870.
- Ashok Zachariah Samuel, Shumpei Horii, Takuji Nakashima, Naoko Shibata, Masahiro Ando, Haruko Takeyama, “Raman microspectroscopy imaging analysis of extracellular vesicles (EVs) biogenesis by filamentous fungus Penicilium chrysogenum”. Advanced Biology, 2022, 2101322.
- Wataru Aoki, Masato Kogawa, Shuhei Matsuda, Keisuke Matsubara, Shintaro Hirata, Yohei Nishikawa, Masahito Hosokawa, Haruko Takeyama, Toru Matoh, Mitsuyoshi Ueda “Massively parallel single-cell genomics of microbiomes in rice paddies”, Frontiers in Microbiology, 2022, 13:1024640
- Keigo Ide, Yohei Nishikawa, Toru Maruyama, Yuko Tsukada, Ryota Wagatsuma, Yusuke Okubo, Masato Kogawa, Naoki Takeda, Haruka Ito, Yoshikatsu Nakano, Koji Kinjo, Michihiro Ito, Masahito Hosokawa, Kei Yura, Shoichiro Suda and Haruko Takeyama, “Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral”, Microbiome, 2022, 10:220
- Hiroko Matsunaga, Koji Arikawa, Miki Yamazaki, Ryota Wagatsuma, Keigo Ide, Ashok Zachariah Samuel, Kazuya Takamochi, Kenji Suzuki, Takuo Hayashi, Masahito Hosokawa, Hideki Kambara, Haruko Takeyama, Reproducible and sensitive micro-tissue RNA sequencing from formalin-fixed paraffin-embedded tissues for spatial gene expression analysis., Scientific reports, 2022, 12(1), 19511-19511
- Taiki Hakozaki, Alexis Nolin-Lapalme, Masato Kogawa, Yusuke Okuma, Shohei Nakamura, Danielle Moreau-Amaru, Taichi Tamura, Yukio Hosomi, Haruko Takeyama, Corentin Richard, Masahito Hosokawa, Bertrand Routy, Cancer Cachexia among Patients with Advanced Non-Small-Cell Lung Cancer on Immunotherapy: An Observational Study with Exploratory Gut Microbiota Analysis., Cancers, 2022, 14(21)
- Miki Yamazaki, Masahito Hosokawa, Hiroko Matsunaga, Koji Arikawa, Kazuya Takamochi, Kenji Suzuki, Takuo Hayashi, Hideki Kambara, Haruko Takeyama, Integrated spatial analysis of gene mutation and gene expression for understanding tumor diversity in formalin-fixed paraffin-embedded lung adenocarcinoma., Frontiers in oncology, 2022, 12, 936190-936190
- Kusakabe M, Taguchi A, Tanikawa M, Wagatsuma R, Yamazaki M, Tsuchimochi S, Toyohara Y, Kawata A, Baba S, Ueno T, Sone K, Mori-Uchino M, Ikemura M, Matsunaga H, Nagamatsu T, Wada-Hiraike O, Kawazu M, Ushiku T, Takeyama H, Oda K, Kawana K, Mano H, Osuga Y. Cells with stem-like properties are associated with the development of HPV18-positive cervical cancer. Cancer Sci. 2022 Nov 20. doi: 10.1111/cas.15664.
- Samuel AZ, Sugiyama K, Ando M, Takeyama H. Direct imaging of intracellular RNA, DNA, and liquid-liquid phase separated membraneless organelles with Raman microspectroscopy. Commun Biol. 2022 Dec 17;5(1):1383. doi: 10.1038/s42003-022-04342-4.